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Atlas Drawings and Ontologies

A set of high resolution digital reference atlases have been created to provide neuroanatomical context to the in situ hybridization and axonal projection data.

From the API, you can:

  • Download the underlying high resolution histological images
  • Download the colorized and label atlas images
  • Download atlas drawings in SVG (scalable vector graphics) format
  • Download the associated structural ontology

The following atlases are available through the API (click on Atlas ID to view in interactive atlas viewer):

Atlas ID

 

Atlas Name

Image Type

Ontology

StructureGraph ID

GraphicGroupLabels

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="320d6076-fceb-4af2-9ebe-95ef9eb25ce8"><ac:plain-text-body><![CDATA[

[1

http://atlas.brain-map.org/atlas?atlas=1]

!P56_Coronal.png

width=32!

"Mouse, P56  Coronal"

"Atlas - Adult Mouse"

"Mouse Brain Atlas"

1

[28,159226751]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="3431c512-64a7-4c80-9c8b-1c7048b46d44"><ac:plain-text-body><![CDATA[

[2

http://atlas.brain-map.org/atlas?atlas=2]

!P56_Sagittal.png

width=32!

"Mouse, P56 Sagittal"

"Atlas - Adult Mouse"

"Mouse Brain Atlas"

1

[28]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f4293515-ff3d-4163-a729-919cd715b0e5"><ac:plain-text-body><![CDATA[

[181276165

http://atlas.brain-map.org/atlas?atlas=181276165]

!DevMouse_P56.jpg

width=32!

"Developing Mouse, P56"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="2fee8a4d-9020-41cb-bbbe-27e07209785c"><ac:plain-text-body><![CDATA[

[181276164

http://atlas.brain-map.org/atlas?atlas=181276164]

!DevMouse_P14.jpg

width=32!

"Developing Mouse, P14"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32,167675952]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="04b458ea-243a-4ae1-b4cb-ef930716d072"><ac:plain-text-body><![CDATA[

[181276162

http://atlas.brain-map.org/atlas?atlas=181276162]

!DevMouse_P4.jpg

width=32!

"Developing Mouse, P4"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="bcc8e330-f22c-40aa-9d04-50d461668e5a"><ac:plain-text-body><![CDATA[

[181276160

http://atlas.brain-map.org/atlas?atlas=181276160]

!DevMouse_E18pt5.jpg

width=32!

"Developing Mouse, E18.5"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="229ad51c-86f2-4627-a637-961e63f31ff0"><ac:plain-text-body><![CDATA[

[181276151

http://atlas.brain-map.org/atlas?atlas=181276151]

!DevMouse_E15pt5.jpg

width=32!

"Developing Mouse, E15.5"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="133ad1de-d167-49cd-9337-82fa785daa9f"><ac:plain-text-body><![CDATA[

[181276130

http://atlas.brain-map.org/atlas?atlas=181276130]

!DevMouse_E13pt5.jpg

width=32!

"Developing Mouse, E13.5"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="db05f61c-77b8-42dd-b022-dc0d34c55559"><ac:plain-text-body><![CDATA[

[181275741

http://atlas.brain-map.org/atlas?atlas=181275741]

!DevMouse_E11pt5.jpg

width=32!

"Developing Mouse, E11.5"

"Atlas - Developing Mouse"

"Developing Mouse Brain Atlas"

17

[32,126768961]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5ca9ef67-79a8-47fd-b838-c4a5e5a56dcd"><ac:plain-text-body><![CDATA[

[138322605

http://atlas.brain-map.org/atlas?atlas=138322605]

!Human_34y.jpg

width=32!

"Human, 34 yrs"

"Atlas - Developing Human"

"Developing Human Brain Atlas"

17

 [31,113753815,113753816]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="fe32b53e-e67c-4527-9a54-a7ffcad89a56"><ac:plain-text-body><![CDATA[

[3

http://atlas.brain-map.org/atlas?atlas=3]

!Human_21pcw.jpg

width=32!

"Human, 21 pcw"

"Atlas - Developing Human"

"Developing Human Brain Atlas"

16

[31]

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="82bf2bb5-bc74-4c95-a912-6b33ec36204f"><ac:plain-text-body><![CDATA[

[138322603

http://atlas.brain-map.org/atlas?atlas=138322603]

!Human_15pcw.jpg

width=32!

"Human, 15 pcw"

"Atlas - Developing Human"

"Developing Human Brain Atlas"

16

[31]

]]></ac:plain-text-body></ac:structured-macro>

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