Atlas Drawings and Ontologies
A set of high resolution digital reference atlases have been created to provide neuroanatomical context to the in situ hybridization and axonal projection data.
From the API, you can:
- Download the underlying high resolution histological images
- Download the colorized and label atlas images
- Download atlas drawings in SVG (scalable vector graphics) format
- Download the associated structural ontology
The following atlases are available through the API (click on Atlas ID to view in interactive atlas viewer):
Atlas ID |
|
Atlas Name |
Image Type |
Ontology |
StructureGraph ID |
GraphicGroupLabels |
||||
|---|---|---|---|---|---|---|---|---|---|---|
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="320d6076-fceb-4af2-9ebe-95ef9eb25ce8"><ac:plain-text-body><![CDATA[ |
[1 |
http://atlas.brain-map.org/atlas?atlas=1] |
!P56_Coronal.png |
width=32! |
"Mouse, P56 Coronal" |
"Atlas - Adult Mouse" |
"Mouse Brain Atlas" |
1 |
[28,159226751] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="3431c512-64a7-4c80-9c8b-1c7048b46d44"><ac:plain-text-body><![CDATA[ |
[2 |
http://atlas.brain-map.org/atlas?atlas=2] |
!P56_Sagittal.png |
width=32! |
"Mouse, P56 Sagittal" |
"Atlas - Adult Mouse" |
"Mouse Brain Atlas" |
1 |
[28] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f4293515-ff3d-4163-a729-919cd715b0e5"><ac:plain-text-body><![CDATA[ |
[181276165 |
http://atlas.brain-map.org/atlas?atlas=181276165] |
!DevMouse_P56.jpg |
width=32! |
"Developing Mouse, P56" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="2fee8a4d-9020-41cb-bbbe-27e07209785c"><ac:plain-text-body><![CDATA[ |
[181276164 |
http://atlas.brain-map.org/atlas?atlas=181276164] |
!DevMouse_P14.jpg |
width=32! |
"Developing Mouse, P14" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32,167675952] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="04b458ea-243a-4ae1-b4cb-ef930716d072"><ac:plain-text-body><![CDATA[ |
[181276162 |
http://atlas.brain-map.org/atlas?atlas=181276162] |
!DevMouse_P4.jpg |
width=32! |
"Developing Mouse, P4" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="bcc8e330-f22c-40aa-9d04-50d461668e5a"><ac:plain-text-body><![CDATA[ |
[181276160 |
http://atlas.brain-map.org/atlas?atlas=181276160] |
!DevMouse_E18pt5.jpg |
width=32! |
"Developing Mouse, E18.5" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="229ad51c-86f2-4627-a637-961e63f31ff0"><ac:plain-text-body><![CDATA[ |
[181276151 |
http://atlas.brain-map.org/atlas?atlas=181276151] |
!DevMouse_E15pt5.jpg |
width=32! |
"Developing Mouse, E15.5" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="133ad1de-d167-49cd-9337-82fa785daa9f"><ac:plain-text-body><![CDATA[ |
[181276130 |
http://atlas.brain-map.org/atlas?atlas=181276130] |
!DevMouse_E13pt5.jpg |
width=32! |
"Developing Mouse, E13.5" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="db05f61c-77b8-42dd-b022-dc0d34c55559"><ac:plain-text-body><![CDATA[ |
[181275741 |
http://atlas.brain-map.org/atlas?atlas=181275741] |
!DevMouse_E11pt5.jpg |
width=32! |
"Developing Mouse, E11.5" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32,126768961] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5ca9ef67-79a8-47fd-b838-c4a5e5a56dcd"><ac:plain-text-body><![CDATA[ |
[138322605 |
http://atlas.brain-map.org/atlas?atlas=138322605] |
!Human_34y.jpg |
width=32! |
"Human, 34 yrs" |
"Atlas - Developing Human" |
"Developing Human Brain Atlas" |
17 |
[31,113753815,113753816] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="fe32b53e-e67c-4527-9a54-a7ffcad89a56"><ac:plain-text-body><![CDATA[ |
[3 |
http://atlas.brain-map.org/atlas?atlas=3] |
!Human_21pcw.jpg |
width=32! |
"Human, 21 pcw" |
"Atlas - Developing Human" |
"Developing Human Brain Atlas" |
16 |
[31] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="82bf2bb5-bc74-4c95-a912-6b33ec36204f"><ac:plain-text-body><![CDATA[ |
[138322603 |
http://atlas.brain-map.org/atlas?atlas=138322603] |
!Human_15pcw.jpg |
width=32! |
"Human, 15 pcw" |
"Atlas - Developing Human" |
"Developing Human Brain Atlas" |
16 |
[31] |
]]></ac:plain-text-body></ac:structured-macro> |