Atlas Drawings and Ontologies
A set of high resolution digital reference atlases have been created to provide neuroanatomical context to the in situ hybridization and axonal projection data.
From the API, you can:
- Download the underlying high resolution histological images
- Download the colorized and label atlas images
- Download atlas drawings in SVG (scalable vector graphics) format
- Download the associated structural ontology
The following atlases are available through the API (click on Atlas ID to view in interactive atlas viewer):
Atlas ID |
|
Atlas Name |
Image Type |
Ontology |
StructureGraph ID |
GraphicGroupLabels |
||||
|---|---|---|---|---|---|---|---|---|---|---|
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d52cb494-6ad3-4970-9ae6-6bec0fc3d520"><ac:plain-text-body><![CDATA[ |
[1 |
http://atlas.brain-map.org/atlas?atlas=1] |
!P56_Coronal.png |
width=32! |
"Mouse, P56 Coronal" |
"Atlas - Adult Mouse" |
"Mouse Brain Atlas" |
1 |
[28,159226751] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a7598efe-fe45-4ab1-8a90-b62ca9ca85b8"><ac:plain-text-body><![CDATA[ |
[2 |
http://atlas.brain-map.org/atlas?atlas=2] |
!P56_Sagittal.png |
width=32! |
"Mouse, P56 Sagittal" |
"Atlas - Adult Mouse" |
"Mouse Brain Atlas" |
1 |
[28] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="2f0f471e-0f79-4c9e-b1f5-c9adef720d96"><ac:plain-text-body><![CDATA[ |
[181276165 |
http://atlas.brain-map.org/atlas?atlas=181276165] |
!DevMouse_P56.jpg |
width=32! |
"Developing Mouse, P56" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="954d28d8-21fb-44cd-a0fd-6896d7df4a45"><ac:plain-text-body><![CDATA[ |
[181276164 |
http://atlas.brain-map.org/atlas?atlas=181276164] |
!DevMouse_P14.jpg |
width=32! |
"Developing Mouse, P14" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32,167675952] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f6119cb0-28df-4588-bd1f-6c6ecf2b6566"><ac:plain-text-body><![CDATA[ |
[181276162 |
http://atlas.brain-map.org/atlas?atlas=181276162] |
!DevMouse_P4.jpg |
width=32! |
"Developing Mouse, P4" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c4bb315d-c90c-435c-997c-6116d9f38311"><ac:plain-text-body><![CDATA[ |
[181276160 |
http://atlas.brain-map.org/atlas?atlas=181276160] |
!DevMouse_E18pt5.jpg |
width=32! |
"Developing Mouse, E18.5" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f89761d4-030f-4cfa-9966-8743d3d1f76f"><ac:plain-text-body><![CDATA[ |
[181276151 |
http://atlas.brain-map.org/atlas?atlas=181276151] |
!DevMouse_E15pt5.jpg |
width=32! |
"Developing Mouse, E15.5" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="7558f86d-833f-4b53-8c8f-10dc874d38c0"><ac:plain-text-body><![CDATA[ |
[181276130 |
http://atlas.brain-map.org/atlas?atlas=181276130] |
!DevMouse_E13pt5.jpg |
width=32! |
"Developing Mouse, E13.5" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f0e9d78e-2eb8-4fff-8934-e64497a99e7e"><ac:plain-text-body><![CDATA[ |
[181275741 |
http://atlas.brain-map.org/atlas?atlas=181275741] |
!DevMouse_E11pt5.jpg |
width=32! |
"Developing Mouse, E11.5" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32,126768961] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="65f27269-9368-4c5b-af05-5ead53bc76e7"><ac:plain-text-body><![CDATA[ |
[138322605 |
http://atlas.brain-map.org/atlas?atlas=138322605] |
!Human_34y.jpg |
width=32! |
"Human, 34 yrs" |
"Atlas - Developing Human" |
"Developing Human Brain Atlas" |
17 |
[31,113753815,113753816] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="06f9c649-63b0-479f-b8d0-cea8bb5c0caf"><ac:plain-text-body><![CDATA[ |
[3 |
http://atlas.brain-map.org/atlas?atlas=3] |
!Human_21pcw.jpg |
width=25! |
"Human, 21 pcw" |
"Atlas - Developing Human" |
"Developing Human Brain Atlas" |
16 |
[31] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="bd70ed74-2fcd-4965-bf55-37d7437b71a6"><ac:plain-text-body><![CDATA[ |
[138322603 |
http://atlas.brain-map.org/atlas?atlas=138322603] |
!Human_15pcw.jpg |
width=20! |
"Human, 15 pcw" |
"Atlas - Developing Human" |
"Developing Human Brain Atlas" |
16 |
[31] |
]]></ac:plain-text-body></ac:structured-macro> |