Atlas Drawings and Ontologies
A set of high resolution digital reference atlases have been created to provide neuroanatomical context to the in situ hybridization and axonal projection data.
From the API, you can:
- Download the colorized and label atlas images
- Download atlas drawings in SVG (scalable vector graphics) format
- Download the underlying high resolution histological images
- Download the associated structural ontology
The following atlases are available through the API (click on Atlas ID to view in interactive atlas viewer):
Atlas ID |
|
Atlas Name |
Image Type |
Ontology |
StructureGraph ID |
GraphicGroupLabels |
||||
|---|---|---|---|---|---|---|---|---|---|---|
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="116c4c3a-7583-4430-a9ff-ce8cdc0e7a36"><ac:plain-text-body><![CDATA[ |
[1 |
http://atlas.brain-map.org/atlas?atlas=1] |
!P56_Coronal.png |
width=32! |
"Mouse, P56 Coronal" |
"Atlas - Adult Mouse" |
"Mouse Brain Atlas" |
1 |
[28,159226751] |
]]></ac:plain-text-body></ac:structured-macro> |
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[2 |
http://atlas.brain-map.org/atlas?atlas=2] |
!P56_Sagittal.png |
width=32! |
"Mouse, P56 Sagittal" |
"Atlas - Adult Mouse" |
"Mouse Brain Atlas" |
1 |
[28] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="3b97875c-04c7-4639-93af-72a48901674e"><ac:plain-text-body><![CDATA[ |
[181276165 |
http://atlas.brain-map.org/atlas?atlas=181276165] |
!DevMouse_P56.jpg |
width=32! |
"Developing Mouse, P56" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32] |
]]></ac:plain-text-body></ac:structured-macro> |
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[181276164 |
http://atlas.brain-map.org/atlas?atlas=181276164] |
!DevMouse_P14.jpg |
width=32! |
"Developing Mouse, P14" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32,167675952] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="13853308-52b8-4d54-93e3-7763e269b802"><ac:plain-text-body><![CDATA[ |
[181276162 |
http://atlas.brain-map.org/atlas?atlas=181276162] |
!DevMouse_P4.jpg |
width=32! |
"Developing Mouse, P4" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="989f7c05-974b-4aec-84aa-f7781ea6c20a"><ac:plain-text-body><![CDATA[ |
[181276160 |
http://atlas.brain-map.org/atlas?atlas=181276160] |
!DevMouse_E18pt5.jpg |
width=32! |
"Developing Mouse, E18.5" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32] |
]]></ac:plain-text-body></ac:structured-macro> |
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[181276151 |
http://atlas.brain-map.org/atlas?atlas=181276151] |
!DevMouse_E15pt5.jpg |
width=32! |
"Developing Mouse, E15.5" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="51708afe-0d74-4a04-9c74-d9387eefbd47"><ac:plain-text-body><![CDATA[ |
[181276130 |
http://atlas.brain-map.org/atlas?atlas=181276130] |
!DevMouse_E13pt5.jpg |
width=32! |
"Developing Mouse, E13.5" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32] |
]]></ac:plain-text-body></ac:structured-macro> |
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[181275741 |
http://atlas.brain-map.org/atlas?atlas=181275741] |
!DevMouse_E11pt5.jpg |
width=32! |
"Developing Mouse, E11.5" |
"Atlas - Developing Mouse" |
"Developing Mouse Brain Atlas" |
17 |
[32,126768961] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="8e5d298e-f31d-4dbd-9a34-8960c2144349"><ac:plain-text-body><![CDATA[ |
[138322605 |
http://atlas.brain-map.org/atlas?atlas=138322605] |
!Human_34y.jpg |
width=32! |
"Human, 34 yrs" |
"Atlas - Developing Human" |
"Developing Human Brain Atlas" |
17 |
[31,113753815,113753816] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="707be25e-d653-4d41-99e2-66cbc80f26c6"><ac:plain-text-body><![CDATA[ |
[3 |
http://atlas.brain-map.org/atlas?atlas=3] |
!Human_21pcw.jpg |
width=25! |
"Human, 21 pcw" |
"Atlas - Developing Human" |
"Developing Human Brain Atlas" |
16 |
[31] |
]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5757e25a-5fea-4c92-ab47-6afe18b0f5b8"><ac:plain-text-body><![CDATA[ |
[138322603 |
http://atlas.brain-map.org/atlas?atlas=138322603] |
!Human_15pcw.jpg |
width=20! |
"Human, 15 pcw" |
"Atlas - Developing Human" |
"Developing Human Brain Atlas" |
16 |
[31] |
]]></ac:plain-text-body></ac:structured-macro> |