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Documentation: Allen Developing Mouse Brain Atlas
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Document

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Description

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[In Situ Hybridization\|^ABADataProductionProcesses.pdf|]

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Processes and procedures used to perform ISH

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[Informatics Data Processing\|^InformaticsDataProcessing.pdf|]

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Design and implementation of the Informatics Data Pipeline (IDP)

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[Reference Atlas, Version 1 (2008)\|^AllenReferenceAtlas_v1_2008_102011.pdf|]

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Overview of the sagittal and coronal Allen Reference Atlases

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[Reference Atlas, Version 2 (2011)\|^AllenReferenceAtlas_v2_2011.pdf|]

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Overview of the sagittal and coronal Allen Reference Atlases

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[Fine Structure Annotation\|^FineStructureAnnotation.pdf|]

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Explanation of the informatics methods used to create the fine structure annotations

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[Acknowledgement of Collaborators\|^Collaborators.pdf|]

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Recognition of collaborators and others who provided assistance


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Supplemental Data: Allen Mouse Brain Atlas
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Document

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Description

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[ISH Platform Controls\|^ISH_Platform_Controls.pdf|]

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Quality control standards for high-throughput RNA in situ hybridization data generation

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[Cross Platform Validation\|^Cross_Platform_Validation.pdf|]

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Methods for validating the data

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[AGEA User Guide\|^AGEA.pdf|]

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Overview of the Anatomic Gene Expression Atlas (AGEA)

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FSA Reports

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Compilations of neuroanatomic and gene expression characteristics for key brain regions or nuclei

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[Somatosensory Annotation\|^SomatosensoryAnnotationWhitePaper.pdf|]

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Technical white paper detailing the methods used to manually annotate the expression patterns of genes in the mouse somatosensory cortex

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[SomatosensoryAnnotation.xls\|^SomatosensoryAnnotation.xls|]

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Spreadsheet containing the somatosensory annotations

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[Comparison of the Top 1000 Genes\|^Top1000GenesAnalysis.pdf|]

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The 1000 most requested genes were analyzed as a validation of the ISH data

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[Comparison of the Top 1000 Genes (Oct 2010)\|^Top1000genesanalysisfina_2010.pdf|]

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An updated list of the 1000 most requested genes that were analyzed as a validation of the ISH data

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