Help

About Online Help Supported Platforms Data Portal API Reference Atlas Viewer Brain Explorer Mouse Brain Developing Mouse Brain Human Brain Developing Human Brain Mouse Spinal Cord Glioblastoma Non-Human Primate Mouse Connectivity Cell Types Aging, Dementia and TBI Allen Brain Observatory
Skip to end of metadata
  • Created by Unknown User (roby), last modified on Jul 17, 2013
Go to start of metadata

Example Queries for Experiment Metadata

 The following query examples demonstrate how to use RESTful Model Access (RMA) to retrieve metadata for experiments. The API utility, RMA Query Builder, can be used to compose RMA queries. Please note that the examples on this page use the "+" character to represent spaces for compatibility with the Google Chrome browser's "omnibox."

Examples

Mouse Brain ISH experiments:

http://api.brain-map.org/api/v2/data/query.xml?criteria=
model::SectionDataSet,
rma::criteria,[failed$eqfalse],products[abbreviation$eq'Mouse'],treatments[name$eq'ISH'],
rma::include,genes,specimen(donor(age)),plane_of_section,section_images
&num_rows=10&start_row=0

Mouse Brain ISH exeriments in comma delimited format:

http://api.brain-map.org/api/v2/data/query.csv?criteria=
model::SectionDataSet,
rma::criteria,[failed$eqfalse],products[abbreviation$eq'Mouse'],treatments[name$eq'ISH'],genes,plane_of_section,
rma::options,
[tabular$eq'plane_of_sections.name+as+plane','genes.acronym+as+gene','data_sets.id+as+section_data_set_id'],
[order$eq'plane_of_sections.name,genes.acronym,data_sets.id']
&num_rows=50&start_row=0

Developing Mouse Brain Atlas ISH experiments with SectionImages:

http://api.brain-map.org/api/v2/data/query.xml?criteria=
model::SectionDataSet,
rma::criteria,[failed$eqfalse],products[abbreviation$eq'DevMouse'],treatments[name$eq'ISH'],
rma::include,genes,specimen(donor(age)),plane_of_section,section_images
&num_rows=10&start_row=0

Sleep Study ISH experiments that include the experimental condition:

http://api.brain-map.org/api/v2/data/query.xml?criteria=
model::SectionDataSet,
rma::criteria,[failed$eqfalse],products[abbreviation$eq'Sleep'],treatments[name$eq'ISH'],
rma::include,probes(gene),plane_of_section,specimen(donor(disease_categories,medical_conditions)),section_images
&num_rows=10

Human Brain ISH Autism Study experiments that include the donor's conditions:

http://api.brain-map.org/api/v2/data/query.xml?criteria=
model::SectionDataSet,
rma::criteria,[failed$eqfalse],products[abbreviation$eq'HumanASD'],treatments[name$eq'ISH'],
rma::include,probes(gene),specimen(donor(age,disease_categories,medical_conditions)),section_images
&num_rows=10

Developing Human Brain ISH experiments:

http://api.brain-map.org/api/v2/data/query.xml?criteria=
model::SectionDataSet,
rma::criteria,[failed$eqfalse],products[abbreviation$eq'DevHumanISH'],treatments[name$eq'ISH'],
rma::include,probes(gene),specimen(donor(age,disease_categories,medical_conditions)),section_images
&num_rows=10

Human Brain Microarray experiments:

http://api.brain-map.org/api/v2/data/query.xml?criteria=
model::MicroarraySlide,
rma::criteria,microarray_data_sets[failed$eqfalse](products[abbreviation$eq'HumanMA']),
rma::include,structures,well_known_files,microarray_data_sets(specimen(donor(age)))

Developing Human Brain Prenatal LMD Microarray experiments:

http://api.brain-map.org/api/v2/data/query.xml?criteria=
model::MicroarraySlide,
rma::criteria,microarray_data_sets[failed$eqfalse](products[abbreviation$eq'DevHumanMA']),
rma::include,structures,well_known_files,microarray_data_sets(specimen(donor(age)))

Developing Human Brain Transcriptome experiments:

http://api.brain-map.org/api/v2/data/query.xml?criteria=
model::Specimen,
rma::criteria,data_sets(products[abbreviation$eq'DevHumanTrans']),
rma::include,structure,donor,well_known_files(well_known_file_type)
  • No labels