The primary data of the \[Allen Mouse Brain Connectivity Atlas\]([http://connectivity.brain-map.org/|http://connectivity.brain-map.org/]) consists of high-resolution images of axonal projections targeting different anatomic regions or various cell types using Cre-dependent specimens. The informatics data processing pipeline produces results that enable the navigation, analysis and visualization of this data.
The output of the pipeline is quantified signal values at a grid voxel level and at a structure level according
to the integrated reference atlas ontology. The grid level data are used downstream to provide an on-the-fly data and search service
and to support visualization of spatial relationships.
Refer to the \[informatics whitepaper\]([http://help.brain-map.org/display/mouseconnectivity/Documentation|http://help.brain-map.org/display/mouseconnectivity/Documentation]) for detailed methods used in the pipeline.